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Sebastian Briesemeister

  • since 2008, PhD Student in the group of Oliver Kohlbacher at the Department of Computer Science, Eberhard Karls University Tuebingen, Germany
  • 2007, Diploma thesis - Weighted Cluster Editing for Clustering Biological Data - supervised by Prof. Sebastian Böcker, University of Jena, Germany
  • 2005-2006, Visiting student at University of York, England, MRes Bioinformatics course
  • 2002-2007, Student at Friedrich-Schiller University Jena, Germany, Bioinformatics (Diploma)
  • 1993-2001, Goethe-Gymnasium Ilmenau, Germany

Research Interest:

  • protein subcellular location prediction
  • epitope prediction (EpiToolKit)
  • Bayesian learning methods

  • interpretable machine learning

  • protein structure modeling

  • fixed-parameter algorithms in Bioinformatics

Publications:

2011

Böcker, S, Briesemeister, S, and Klau, GW (2011).
Exact Algorithms for Cluster Editing: Evaluation and Experiments
Algorithmica, 60(2):316-334.

2010

Briesemeister, S, Rahnenführer, J, and Kohlbacher, O (2010).
YLoc – an interpretable web server for predicting subcellular localization
Nucl. Acids Res., 38:W497-W502.

Briesemeister, S, Rahnenführer, J, and Kohlbacher, O (2010).
Going from where to why - interpretable prediction of protein subcellular localization
Bioinformatics, 26(9):1232-1238.

Kirchler, T, Briesemeister, S, Singer, M, Schütze, K, Keinath, M, Kohlbacher, O, Vicente-Carbajosa, J, Teige, M, Harter, K, and Chaban, C (2010).
The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors
Eur. J. Cell Biol., 89(2-3):175-183.

2009

Briesemeister, S, Blum, T, Brady, S, Lam, Y, Kohlbacher, O, and Shatkay, H (2009).
SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins
J. Proteome Res., 8(11):5363–5366.

Blum, T, Briesemeister, S, and Kohlbacher, O (2009).
MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
BMC Bioinformatics, 10:274.

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2009).
Going Weighted: Parameterized Algorithms for Cluster Editing
Theoretical Computer Science, 410(52):5467-5480.

Böcker, S, Briesemeister, S, and Klau, GW (2009). 
On Optimal Comparability Editing with Applications to Molecular Diagnostics
BMC Bioinformatics, 10(Suppl 1):S61.

2008

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2008).
Going Weighted: Parameterized Algorithms for Cluster Editing
In: Proc. of Conference on Combinatorial Optimization and Applications (COCOA 2008),volume 5165, pp. 1-12, Lect. Notes Comput. Sc., Springer.

Böcker, S, Briesemeister, S, and Klau, GW (2008).
Exact Algorithms for Cluster Editing: Evaluation and Experiments
In: Proc. of Workshop on Experimental Algorithms (WEA 2008), pp. 289–302, Springer.

Böcker, S, Briesemeister, S, Bui, QB, and Truss, A (2008).
A fixed-parameter approach for Weighted Cluster Editing
In: Proc. of Asia-Pacific Bioinformatics Conference (APBC 2008), volume 5, pp. 211-220, Imperial College Press.

Software:

Presentations:

Posters:

Teaching:

Latest content created by this user

Page
Slide templates for Powerpoint slides Oct 10, 2010
Computational Immunomics (BIOINF3360) Sep 08, 2009
Computational Immunomics (BIOINF3360) Sep 08, 2009
MultiLoc / TargetLoc Nov 09, 2009
Computational Immunomics (BIOINF 3360) Sep 08, 2009
File
transitivity_editing.tar.gz Jul 21, 2011
Assignment6.pdf May 26, 2011
Assignment5.pdf May 19, 2011
Assignment4.pdf May 12, 2011
Assignment3.pdf May 05, 2011
Folder
CI Sep 08, 2009
CI Sep 08, 2009
CI Sep 08, 2009
Assignments Apr 22, 2010
SW Feb 05, 2010
Image
yloc_logo.png Apr 26, 2010
YLoc_logo.png Apr 12, 2010
Sherloc2_logo.png Nov 09, 2009
sherloc_logo72.png Nov 09, 2009
Diff48sure.jpg Nov 09, 2009
All content created by Sebastian Briesemeister…